Information de reference pour ce titreAccession Number: | 00005797-199603010-00002.
|
Author: | Broda, Paul *; Birch, Paul R. J. +; Brooks, Paul R.; Sims, Paul F. G.
|
Institution: | Department of Biochemistry and Applied Molecular Biology, UMIST, Manchester M60 1QD, UK.
|
Title: | Lignocellulose degradation by Phanerochaete chrysosporium: gene families and gene expression for a complex process.[Miscellaneous]
|
Source: | Molecular Microbiology. 19(5):923-932, March 1996.
|
Abstract: | Summary: Phanerochaete chrysosporium completely degrades lignocellulose. The most recalcitrant component, lignin, is oxidized by the radical products of lignin and manganese peroxidases, whereas cellulose and hemicellulose are hydrolysed. Both peroxidases and cellulases exist as complex families at both the DNA and protein levels. The lignin peroxidases may function principally when mycelium-bound and, therefore, undetectable in culture supernatants. Moreover, methods for the study of P. chrysosporium must be applicable to solid substrate as well as liquid-culture conditions. For these reasons, detailed studies of gene expression, made possible by the reverse transcriptase-polymerase chain reaction method, are essential. Such studies reveal that gene families are subject to differential expression. The cellulase system has some differences from that of Trichoderma reesei; the distinction made between the activities of exocellobiohydrolases and endoglucanases needs to be re-appraised in both species. Current studies also seek to reconstruct the systems of degradation of lignocellulose and its individual components by heterologous expression of individual proteins in recombinant systems, and their use in mechanistic studies singly and in combinations.
(C) 1996 Blackwell Science Ltd.
|
References: | Ander, P. (1994) The cellobiose oxidizing enzymes CBQ and CbO as related to lignin and cellulose degradation - a review. FEMS Microbiol Rev 13: 297-312.
Andrawis, A., Pease, E.A., and Tien, M. (1990) Extracellular peroxidases of Phanerochaete chrysosporium: cDNA cloning and expression. In Biotechnology in Pulp and Paper Manufacture: Applications and Fundamental Investigations. Kirk, T.K., and Chang, H. (eds). Boston: Butterworth-Heinemann, pp. 601-613.
Bao, W., and Renganathan, V. (1992) Cellobiose oxidase of Phanerochaete chrysosporium enhances crystalline cellulose degradation by cellulases. FEBS Letts 302: 77-80.
Birch, P.R.J., Sims, P.F.G., and Broda, P. (1995) Substrate-dependent differential splicing of introns in the regions encoding the cellulose binding domains of two exocello-biohydrolase I-like genes in Phanerochaete chrysosporium. Appl Environ Microbiol 61: 3741-3744.
Boel, E., Hansen, M.T., Hjort, I., Hoegh, I., and Fiil, N.P. (1984) Two different types of intervening sequence in the glucoamylase gene of Aspergillus niger. EMBO J 3: 1581-1585.
Bonnarme, P., and Jeffries, T.W. (1990) Mn(II) regulation of lignin peroxidases and manganese-dependent peroxidases from lignin-degrading white-rot fungi. Appl Environ Microbiol 56: 210-217.
Boominathan, K., Dass, S.B., Randall, T.A., Kelley, R.L., and Reddy, C.A. (1990) Lignin peroxidase-negative mutant of the white-rot basidiomycete Phanerochaete chrysosporium. J Bacteriol 172: 260-265.
Boominathan, K., D'Souza, T.M., Naidu, P.S., Dosoretz, C., and Reddy, C.A. (1993) Temporal expression of the major lignin peroxidase genes of Phanerochaete chrysosporium. Appl Environ Microbiol 59: 3946-3950.
Broda, P., Birch, P.R.J., Brooks, P.R., and Sims, P.F.G. (1995) PCR-mediated analysis of lignocellulolytic gene transcription by Phanerochaete chrysosporium: substrate-dependent differential expression within gene families. Appl Environ Microbiol 61: 2358-2364.
Brooks, P.R., Sims, P.F.G., and Broda, P. (1993) Isozyme-specific polymerase chain reaction analysis of differential gene expression: a general method applied to lignin peroxidase genes of Phanerochaete chrysosporium. Bio/Technology 11: 830-834.
Brown, J.A., Glenn, J.K., and Gold, M.H. (1990) Manganese regulates the expression of manganese peroxidase by Phanerochaete chrysosporium. J Bacteriol 172: 3125-3130.
Brown, J.A., Alic, M., and Gold, M.H. (1991) Manganese peroxidase gene transcription in Phanerochaete chrysosporium: activation by magnesium. J Bacteriol 173: 4101-4106.
Cancel, A.M., Orth, A.B., and Tien, M. (1993) Lignin and veratryl alcohol are not inducers of the ligninolytic system of Phanerochaete chrysosporium. Appl Environ Microbiol 59: 2909-2913.
Copa-Patino, J.-L., and Broda, P. (1994) A Phanerochaete chrysosporium [beta]-D-xylosidase with specificity for (1-3)-[beta]-D-glucan linkages. Carbohyd Res 253: 265-275.
Copa-Patino, J.-L., Kim, Y.G., and Broda, P. (1993) Production and initial characterisation of the xylan-degrading system of Phanerochaete chrysosporium. Appl Microbiol Biotechnol 40: 69-76.
Covert, S.F., Vanden Wymelenberg, A., and Cullen, D. (1992a) Structure, organisation and transcription of a cellobiohydrolase gene cluster from Phanerochaete chrysosporium. Appl Environ Microbiol 58: 2165-2175.
Covert, S.F., Bolduc, J., and Cullen, D. (1992b) Genomic organisation of a cellulase gene family in Phanerochaete chrysosporium. Curr Genet 22: 407-413.
Daniel, G. (1994) Use of electron microscopy for aiding our understanding of wood biodegradation. FEMS Microbiol Rev 13: 199-233.
Daniel, G., Nilsson, T., and Pettersson, B. (1989) Intra- and extracellular localisation of lignin peroxidase during the degradation of solid wood and wood fragments by Phanerochaete chrysosporium by using transmission electron microscopy and immuno-gold labelling. Appl Environ Microbiol 55: 871-881.
Daniel, G., Pettersson, B., Nilsson, T., and Volc, J. (1990) Use of immunogold cytochemistry to detect Mn(II)-dependent and lignin peroxidase in wood degradation by the white-rot fungi Phanerochaete chrysosporium and Lentinula edodes. Can J Bot 68: 920-933.
Daniel, G., Volc, J., Kubatova, E., and Nilsson, T. (1992) Ultrastructural and immuno-cytochemical studies on the H2O2 producing enzyme pyranose oxidase in Phanerochaete chrysosporium grown under liquid culture conditions. Appl Environ Microbiol 58: 3667-3676.
Datta, A., Betterman, A., and Kirk, T.K. (1991) Identification of a specific manganese peroxidase among ligninolytic enzymes secreted by Phanerochaete chrysosporium during wood decay. Appl Environ Microbiol 57: 1453-1460.
Dhawale, S. (1993) Is an activator protein-2-like transcription factor involved in regulating gene expression during nitrogen limitation in fungi? Appl Environ Microbiol 59: 2335-2338.
Dosoretz, C.G., Dass, S.B., Reddy, C.A., and Grethlein, H.E. (1990) Protease-mediated degradation of lignin peroxidase in liquid cultures of Phanerochaete chrysosporium. Appl Environ Microbiol 56: 3429-3434.
Dosoretz, C.G., Rothschild, N., and Hadar, Y. (1993) Over-production of lignin peroxidase by Phanerochaete chrysosporium (BKM-F-1767) under nonlimiting nutrient conditions. Appl Environ Microbiol 59: 1919-1926.
Eriksson, K.-E., and Petterson, B. (1975) Extracellular enzyme system utilised by the fungus Sporotrichum pulverulentum (chrysosporium lignorum) for the breakdown of cellulose. Eur J Biochem 51: 193-206.
Eriksson, K-E.L., Blanchette, R.A., and Ander, P. (1990) Microbial and Enzymatic Degradation of Wood and Wood Components. Berlin: Springer-Verlag.
Farrell, R.L., Murtagh, K.E., Tien, M., Mozuch, M.D., and Kirk, T.K. (1989) Physical and enzymatic properties of lignin peroxidase isoenzymes from Phanerochaete chrysosporium. Enz Microb Technol 11: 322-328.
Gaskell, J., Stewart, P., Kersten, P.J., Covert, S.F., Reiser, J., and Cullen, D. (1994) Establishment of genetic linkage by allele-specific polymerase chain reaction: application to the lignin peroxidase gene family of Phanerochaete chrysosporium. Bio/Technology 12: 1372-1375.
Gilkes, N.R., Henrissat, B., Kilburn, D.G., Miller, R.C., and Warren, R.A.J. (1991) Domains in microbial [beta]-1, 4-glycanases: sequence conservation, function, and enzyme families. Microbiol Rev 55: 303-315.
Gold, M.H., and Alic, M. (1993) Molecular biology of the lignin-degrading basidiomycete Phanerochaete chrysosporium. Microbiol Rev 57: 605-622.
Haemmerli, S.D., Leisola, M.S.A., and Fiechter, A. (1986) Polymerisation of lignins by ligninases from Phanerochaete chrysosporium. FEMS Microbiol Letts 35: 33-36.
Hammel, K.E., Jensen, K.A., Mozuch, M.D., Landucci, L.L., Tien, M., and Pease, E.A. (1993) Ligninolysis by a purified lignin peroxidase. J Biol Chem 268: 12274-12281.
Hatakka, A. (1994) Lignin-modifying enzymes from selected white-rot fungi: production and role in lignin degradation. FEMS Microbiol Rev 13: 125-135.
Holzbaur, E.L.F., and Tien, M. (1988) Structure and regulation of a lignin peroxidase gene from Phanerochaete chrysosporium. Biochem Biophys Res Commun 155: 626-633.
James, C.M., Soares Felipe, M.S., Sims, P.F.G., and Broda, P. (1992) Expression of a single lignin peroxidase-encoding gene in Phanerochaete chrysosporium strain ME446. Gene 114: 217-222.
Johnson, T.M., and Li, J.K.-K. (1991) Heterologous expression and characterisation of an active lignin peroxidase from Phanerochaete chrysosporium using recombinant baculovirus. Arch Bioch Biophys 291: 371-378.
Johnston, C.G., and Aust, S.D. (1994a) Transcription of ligninase H8 by Phanerochaete chrysosporium under nutrient nitrogen sufficient conditions. Biochem Biophys Res Commun 200: 108-112.
Johnston, C.G., and Aust, S.D. (1994b) Detection of Phanerochaete chrysosporium in soil by PCR and restriction enzyme analysis. Appl Environ Microbiol 60: 2350-2354.
Joseleau, J.-P., Gharibian, S., Comtat, J., Lefebvre, A, and Ruel, K. (1994) Indirect involvement of ligninolytic enzyme systems in cell wall degradation. FEMS Microbiol Rev 13: 255-263.
Kirk, T.K., and Farrell, R.L. (1987) Enzymatic `combustion': the microbial degradation of lignin. Annu Rev Microbiol 41: 465-505.
Kremer, S.M., and Wood, P.M. (1992) Production of Fenton's reagent by cellobiose oxidase from cellulolytic cultures of Phanerochaete chrysosporium. Eur J Biochem 208: 807-814.
Knowles, J., Lehtovaara, P., and Teeri, T. (1987) Cellulase families and their genes. Trends Biotechnol 5: 255-261.
Leisola, M.S.A., Haemmerli, S.D., Waldner, R., Shoemaker, H.E., Schmidt, H.W.H., and Fiechter, A. (1988) Metabolism of a lignin model compound, 3,4-dimethoxybenzyl alcohol, by Phanerochaete chrysosporium. Cellulose Chem Technol 22: 267-277.
Li, D., Alic, M., and Gold, M.H. (1994) Nitrogen regulation of lignin peroxidase gene transcription. Appl Environ Microbiol 60: 3447-3449.
Matusiewicz, H., and Barnes, R.M. (1985) Tree ring wood analysis after hydrogen peroxide pressure decomposition with inductively coupled plasma atomic emission spectrometry and electrothermal vaporisation. Anal Chem 57: 406-411.
Mayfield, M.B., Kishi, K., Alic, M., and Gold, M.H. (1994) Homologous expression of recombinant manganese peroxidase in Phanerochaete chrysosporium. Appl Environ Microbiol 60: 4303-4309.
Mester, T., De Jong, E., and Field, J.A. (1995) Manganese regulation of veratryl alcohol in white rot fungi and its indirect effect on lignin peroxidase. Appl Environ Microbiol 61: 1881-1887.
Moukha, S.M., Wosten, H.A.B., Asther, M., and Wessels, J.G.H. (1993a) In situ localisation of the secretion of lignin peroxidases in colonies of Phanerochaete chrysosporium using a sandwiched mode of culture. J Gen Microbiol 139: 969-978.
Moukha, S.M., Wosten, H.A.B., Mylius, E.-J., Asther, M., and Wessels, J.G.H. (1993b) Spatial and temporal accumulation of mRNAs encoding two common lignin peroxidases in Phanerochaete chrysosporium. J Bacteriol 175: 3672-3678.
Orth, A.B., Royse, D.J., and Tien, M. (1993) Ubiquity of lignin-degrading peroxidases among various wood-degrading fungi. Appl Environ Microbiol 59: 4017-4023.
Pease, E.A., Andrawis, A, and Tien, M. (1989) Manganese-dependent peroxidase from Phanerochaete chrysosporium: primary structure deduced from cDNA sequence. J Biol Chem 264: 13531-13535.
Pease, E.A., and Tien, M. (1992) Heterogeneity and regulation of manganese peroxidases from Phanerochaete chrysosporium. J Bacteriol 174: 3532-3540.
Pease, E.A., Aust, S.D., and Tien, M. (1991) Heterologous expression of active manganese peroxidase from Phanerochaete chrysosporium using the baculovirus expression system. Biochem Biophys Res Commun 179: 897-903.
Perez, J., and Jeffries, T.W. (1992) Roles of manganese and organic acid chelators in regulating lignin degradation and biosynthesis of peroxidases by Phanerochaete chrysosporium. Appl Environ Microbiol 58: 2402-2409.
Perie, F.H., and Gold, M.H. (1991) Manganese regulation of manganese peroxidase expression and lignin degradation by the white-rot fungus Dichomitus squalens. Appl Environ Microbiol 57: 2240-2245.
Pribnow, D., Mayfield, M.B., Nipper, V.J., Brown, J.A., and Gold, M.H. (1989) Characterisation of a cDNA encoding a manganese peroxidase from the lignin-degrading basidiomycete Phanerochaete chrysosporium. J Biol Chem 264: 5036-5040.
Raeder, U., Thompson, W., and Broda, P. (1989) RFLP-based genetic map of Phanerochaete chrysosporium ME446: lignin peroxidase genes occur in clusters. Mol Microbiol 3: 911-918.
Reddy, C.A., and D'Souza, T.M. (1994) Physiology and molecular biology of the lignin peroxidases of Phanerochaete chrysosporium. FEMS Microbiol Rev 13: 137-152.
Reiser, J., Walther, I.S., Fraefel, C., and Fiechter, A. (1993) Methods to investigate the expression of lignin peroxidase genes by the white-rot fungus Phanerochaete chrysosporium. Appl Environ Microbiol 59: 2897-2903.
Ruel, K., and Joseleau, J.-P. (1991) Involvement of an extracellular glucan sheath during degradation of Populus wood by Phanerochaete chrysosporium. Appl Environ Microbiol 57: 374-384.
Ruttimann-Johnson, C., Salas, L., Vicuna, R., and Kirk, T.K. (1993) Extracellular enzyme production and synthetic lignin mineralisation by Ceriporiopsis subvermispora. Appl Environ Microbiol. 59: 1792-1797.
Saloheimo, M., Lehtovaara, P. Pentilla, M., Teeri, T., Stahlberg, J., Johansson, G., Pettersson, G., Claeyssens, M., Tomme, P., and Knowles, J.K.C. (1988) EGIII, a new endoglucanase from Trichoderma reesei: the characterisation of both gene and enzyme. Gene 63: 11-21.
Saloheimo, M., Barajas, V., Niku-Paavola, M., and Knowles, J. (1989) A lignin peroxidase-encoding cDNA from the white-rot fungus Phlebia radiata: characterisation and expression in Trichoderma reesei. Gene 85: 343-351.
Saloheimo, M., Henrissat, B., Hoffren, A-M., Teleman, O., and Pentilla, M. (1994) A novel, small endoglucanase gene, egl5, from Trichoderma reesei, isolated by expression in yeast. Mol Microbiol 13: 219-228.
Schrank, A., Tempelaars, C.A.M., Sims, P.F.G., Oliver, S.G., and Broda, P. (1991) The trpC gene of Phanerochaete chrysosporium is unique in containing an intron but nevertheless maintains the order of functional domains seen in other fungi. Mol Microbiol 5: 467-476.
Sims, P.F.G., James, C.M., and Broda, P. (1988) The identification, molecular cloning and characterization of a gene from Phanerochaete chrysosporium that shows strong homology to the exo-cellobiohydrolase I gene from Trichoderma reesei. Gene 74: 411-422.
Sims, P.F.G., Soares Felipe, M.S., Wang, Q., Gent, M.E., Tempelaars, C.A.M., and Broda, P. (1994) Differential expression of multiple exo-cellobiohydrolase I-like genes in the lignin-degrading fungus Phanerochaete chrysosporium. Mol Microbiol 12: 209 216.
Sommer, R., and Tautz, D. (1989) Minimal homology requirements for PCR primers. Nucl Acids Res 16: 1219.
Srebotnik, E., and Messner, K. (1990) In Proceedings: Biotechnology in Pulp and Paper Manufacture. Kirk, T.K., and Chang, H.M. (eds). Boston: Butterworth and Heinemann, pp. 111-123.
Srebotnik, E., and Messner, K. (1994) A simple method that uses differential staining and light microscopy to assess the selectivity of wood delignification by white-rot fungi. Appl Environ Microbiol 60: 1383-1386.
Stahlberg, J., Johansson, J., and Petterson, G. (1993) Trichoderma reesei has no true exo-cellulase: all intact and truncated cellulases produce new reducing end groups on cellulose. Biochem Biophys Acta 1157: 107-113.
Stewart, P., Kersten, P., Vanden Wymelenberg, A., Gaskell, J., and Cullen, D. (1992) Lignin peroxidase gene family of Phanerochaete chrysosporium: complex regulation by carbon and nitrogen limitation and identification of a second dimorphic chromosome. J Bacteriol 174: 5036-5042.
Taneda, K., Ota, M., and Nagashima, M. (1986) The radial distribution and concentration of several chemical elements in woods of five Japanese species. Mokazai Gakkaishi 32: 833-841.
Tempelaars, C.A.M., Birch, P.R.J., Sims, P.F.G., and Broda, P. (1994) Isolation, characterisation, and analysis of the expression of the cbhII gene of Phanerochaete chrysosporium. Appl Environ Microbiol 60: 4387-4393.
Uzcategui, E., Ruiz, A., Montesino, R., Johansson, G., and Pettersson, G. (1991) The 1,4-[beta]-D-glucan cellobiohydrolases from Phanerochaete chrysosporium: a system of synergistically acting enzymes homologous to Trichoderma reesei. J Biotech 19: 271-286.
Wariishi, H., Valli, K., and Gold, M.H. (1991) In vitro depolymerisation of lignin by manganese peroxidase of Phanerochaete chrysosporium. Biochem Biophys Res Commun 176: 269-275.
Wyatt, A.M., and Broda, P. (1995) Informed strain improvement for lignin degradation by Phanerochaete chrysosporium. Microbiology 141: 2811-2822.
|
Language: | English.
|
Document Type: | Microreviews.
|
Journal Subset: | Life Sciences.
|
ISSN: | 0950-382X
|
NLM Journal Code: | mom, 8712028
|
Annotation(s) | |
|
|