Information de reference pour ce titreAccession Number: | 00006056-200903120-00068.
|
Author: | Mandel, Mark J. 1; Wollenberg, Michael S. 1; Stabb, Eric V. 2; Visick, Karen L. 3; Ruby, Edward G. 1
|
Institution: | (1)Department of Medical Microbiology and Immunology, University of Wisconsin School of Medicine and Public Health, 1550 Linden Drive, Madison, Wisconsin 53706, USA (2)Department of Microbiology, University of Georgia, 828 Biological Sciences, Athens, Georgia 30602, USA (3)Department of Microbiology and Immunology, Loyola University Chicago, Maywood, Illinois 60153, USA
|
Title: | A single regulatory gene is sufficient to alter bacterial host range.[Letter]
|
Source: | Nature. 458(7235):215-218, March 12, 2009.
|
References: | 1. Aas, J. A., Paster, B. J., Stokes, L. N., Olsen, I. & Dewhirst, F. E. Defining the normal bacterial flora of the oral cavity. J. Clin. Microbiol. 43, 5721-5732 (2005)
2. Gill, S. R. et al. Metagenomic analysis of the human distal gut microbiome. Science 312, 1355-1359 (2006)
3. Moran, N. A. Symbiosis as an adaptive process and source of phenotypic complexity. Proc. Natl Acad. Sci. USA 104 (suppl. 1). 8627-8633 (2007)
4. Mazmanian, S. K., Round, J. L. & Kasper, D. L. A microbial symbiosis factor prevents intestinal inflammatory disease. Nature 453, 620-625 (2008)
5. Groisman, E. A. & Casadesus, J. The origin and evolution of human pathogens. Mol. Microbiol. 56, 1-7 (2005)
6. Sonnenburg, J. L. et al. Glycan foraging in vivo by an intestine-adapted bacterial symbiont. Science 307, 1955-1959 (2005)
7. Xu, J. & Gordon, J. I. Honor thy symbionts. Proc. Natl Acad. Sci. USA 100, 10452-10459 (2003)
8. Brinig, M. M., Register, K. B., Ackermann, M. R. & Relman, D. A. Genomic features of Bordetella parapertussis clades with distinct host species specificity. Genome Biol. 7, R81 (2006)
9. Edwards, R. A., Olsen, G. J. & Maloy, S. R. Comparative genomics of closely related salmonellae. Trends Microbiol. 10, 94-99 (2002)
10. Rajashekara, G., Glasner, J. D., Glover, D. A. & Splitter, G. A. Comparative whole-genome hybridization reveals genomic islands in Brucella species. J. Bacteriol. 186, 5040-5051 (2004)
11. Ruby, E. G. & Nealson, K. H. Symbiotic association of Photobacterium fischeri with the marine luminous fish Monocentris japonica; a model of symbiosis based on bacterial studies. Biol. Bull. 151, 574-586 (1976)
12. Mandel, M. J., Stabb, E. V. & Ruby, E. G. Comparative genomics-based investigation of resequencing targets in Vibrio fischeri: focus on point miscalls and artefactual expansions. BMC Genomics 9, 138 (2008)
13. Ruby, E. G. et al. Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners. Proc. Natl Acad. Sci. USA 102, 3004-3009 (2005)
14. Visick, K. L. & Skoufos, L. M. Two-component sensor required for normal symbiotic colonization of Euprymna scolopes by Vibrio fischeri. J. Bacteriol. 183, 835-842 (2001)
15. Yip, E. S., Geszvain, K., DeLoney-Marino, C. R. & Visick, K. L. The symbiosis regulator rscS controls the syp gene locus, biofilm formation and symbiotic aggregation by Vibrio fischeri. Mol. Microbiol. 62, 1586-1600 (2006)
16. Hussa, E. A., Darnell, C. L. & Visick, K. L. RscS functions upstream of SypG to control the syp locus and biofilm formation in Vibrio fischeri. J. Bacteriol. 190, 4576-4583 (2008)
17. Yip, E. S., Grublesky, B. T., Hussa, E. A. & Visick, K. L. A novel, conserved cluster of genes promotes symbiotic colonization and [sigma]54-dependent biofilm formation by Vibrio fischeri. Mol. Microbiol. 57, 1485-1498 (2005)
18. Geszvain, K. & Visick, K. L. Multiple factors contribute to keeping levels of the symbiosis regulator RscS low. FEMS Microbiol. Lett. 285, 33-39 (2008)
19. Stabb, E. V., Schaefer, A., Bose, J. L. & Ruby, E. G. in Chemical Communication among Bacteria (eds Winans, S. C. & Bassler, B. L.) 233-250 (ASM Press, 2008)
20. Bose, J. L., Rosenberg, C. S. & Stabb, E. V. Effects of luxCDABEG induction in Vibrio fischeri: enhancement of symbiotic colonization and conditional attenuation of growth in culture. Arch. Microbiol. 190, 169-183 (2008)
21. Visick, K. L., Foster, J., Doino, J., McFall-Ngai, M. & Ruby, E. G. Vibrio fischeri lux genes play an important role in colonization and development of the host light organ. J. Bacteriol. 182, 4578-4586 (2000)
22. Haygood, M. G. Light organ symbioses in fishes. Crit. Rev. Microbiol. 19, 191-216 (1993)
23. Hacker, J. & Kaper, J. B. Pathogenicity islands and the evolution of microbes. Annu. Rev. Microbiol. 54, 641-679 (2000)
24. Long, S. R. Genes and signals in the rhizobium-legume symbiosis. Plant Physiol. 125, 69-72 (2001)
25. Cowles, C. E. & Goodrich-Blair, H. The Xenorhabdus nematophila nilABC genes confer the ability of Xenorhabdus spp. to colonize Steinernema carpocapsae nematodes. J. Bacteriol. 190, 4121-4128 (2008)
26. Foster, J. S., Von Boletzky, S. & McFall-Ngai, M. J. A comparison of the light organ development of Sepiola robusta Naef and Euprymna scolopes Berry (Cephalopoda: Sepiolidae). Bull. Mar. Sci. 70, 141-153 (2002)
27. Darling, A. C., Mau, B., Blattner, F. R. & Perna, N. T. Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res. 14, 1394-1403 (2004)
28. Stabb, E. V. & Ruby, E. G. RP4-based plasmids for conjugation between Escherichia coli and members of the Vibrionaceae. Methods Enzymol. 358, 413-426 (2002)
29. Stabb, E. V. et al. in Recent Advances in Marine Science and Technology 2000 (ed. Saxena, N.) 269-277 (PACON International, 2001)
30. Silhavy, T. J., Berman, M. L. & Enquist, L. W. Experiments with Gene Fusions (Cold Spring Harbor Laboratory Press, 1984)
31. Hussa, E. A., O'Shea, T. M., Darnell, C. L., Ruby, E. G. & Visick, K. L. Two-component response regulators of Vibrio fischeri: identification, mutagenesis, and characterization. J. Bacteriol. 189, 5825-5838 (2007)
32. van Hijum, S. A., Zomer, A. L., Kuipers, O. P. & Kok, J. Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies. Nucleic Acids Res. 33, W560-W566 (2005)
33. Untergasser, A. et al. Primer3Plus, an enhanced web interface to Primer3. Nucleic Acids Res. 35, W71-W74 (2007)
34. Altschul, S. F. et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402 (1997)
35. Ruby, E. G. & Nealson, K. H. Pyruvate production and excretion by the luminous marine bacteria. Appl. Environ. Microbiol. 34, 164-169 (1977)
36. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882 (1997)
37. Tamura, K., Dudley, J., Nei, M. & Kumar, S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24, 1596-1599 (2007)
38. Swofford, D. L. PAUP*: Phylogenetic Analysis Using Parsimony (* and Other Methods) 4th edn (Sinauer, 2003)
39. Posada, D. & Crandall, K. A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14, 817-818 (1998)
40. Ronquist, F. & Huelsenbeck, J. P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574 (2003)
41. Zwickl, D. J. Genetic Algorithm Approaches for the Phylogenetic Analysis of Large Biological Sequence Datasets under the Maximum Likelihood Criterion. PhD. thesis, Univ. Texas at Austin (2006)
42. Karlin, S. & Mrazek, J. Predicted highly expressed genes of diverse prokaryotic genomes. J. Bacteriol. 182, 5238-5250 (2000)
43. Finn, R. D. et al. Pfam: clans, web tools and services. Nucleic Acids Res. 34, D247-D251 (2006)
44. Kall, L., Krogh, A. & Sonnhammer, E. L. Advantages of combined transmembrane topology and signal peptide prediction - the Phobius web server. Nucleic Acids Res. 35, W429-W432 (2007)
45. Page, R. D. TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12, 357-358 (1996)
|
Language: | English.
|
Document Type: | LETTERS.
|
Journal Subset: | Life Sciences. Physical Science & Engineering.
|
ISSN: | 0028-0836
|
NLM Journal Code: | 0410462, nsc
|
DOI Number: | https://dx.doi.org/10.1038/natur...- ouverture dans une nouvelle fenêtre
|
Annotation(s) | |
|
|